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Data -> Melitaea cinxia
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Resource [Genomic]  
Data source NCBI
Publication
Organism strain
Assembly
Genomic Size 378 Mb
GC content 37.23%
Number of scaffolds 8,261
Scaffold N50 119,328
Number of contigs 49,844
Contig N50 13,489
Gene Set
Gene
Protein
BioSample SAMN01932438
Submitter University of Helsinki
Assembly level Scaffold
GenBank assembly accession GCA_000716385.1
RefSeq assembly accession n/a
WGS Project APLT01
Assembly method SOAPdenovo v. 1.05 ; Newbler v. 2.6 ; MIP Scaffolder v. MARCH-2012
Sequencing technology Illumina; 454; SOLiD
Transcriptome 1
Tissue Melitaea cinxia
Year 2008
Platform Roche 454
Layout SINGLE
Raw reads 595,941
Data accession SRA000207
Assemble software CAP3
Contigs 67,902
Annotated 17,216
Reference Vera J C, Wheat C W, Fescemyer H W, et al. Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing[J]. Molecular ecology, 2008, 17(7): 1636-1647.
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