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Data -> Plutella xylostella
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Resource [Genomic]   [GFF3]   [mRNA]   [Protein]
Data source DBM-DB
Publication You, M. et al. A heterozygous moth genome provides insights into herbivory and detoxification. Nature genetics 45, 220-225 (2013).  [PDF]
Organism strain "DBM-FZ-S"
Assembly DBM-DB v1.0
Genomic Size 383 Mb
GC content 38.34%
Number of scaffolds 1,819
Scaffold N50 737,183
Number of contigs 38,757
Contig N50 18,517
Gene Set DBM-DB v1.0
Gene 18,072
Protein 18,072
BioSample SAMN02953808
Submitter Plutella xylostella genome consortium
Assembly level Scaffold
GenBank assembly accession GCA_000330985.1
RefSeq assembly accession GCF_000330985.1
WGS Project AHIO01
Assembly method BAC by BAC v. JUN-2011
Sequencing technology Illumina Hiseq2000
Transcriptome 1
Tissue Egg
Year 2012
Platform Illumina
Layout PAIRED
Raw reads 29,117,726
Data accession SRR179062
Assemble software Trnity
Contigs 87,647
Annotated 39,221
Reference He W, You M, Vasseur L, et al. Developmental and insecticide-resistant insights from the< i> de novo assembled transcriptome of the diamondback moth,< i> Plutella xylostella[J]. Genomics, 2012, 99(3): 169-177.
Download   [Fasta]      
Transcriptome 2
Tissue Larva
Year 2012
Platform Illumina
Layout PAIRED
Raw reads 28,588,990
Data accession SRR179508
Assemble software Trnity
Contigs 63,573
Annotated 29,097
Reference He W, You M, Vasseur L, et al. Developmental and insecticide-resistant insights from the< i> de novo assembled transcriptome of the diamondback moth,< i> Plutella xylostella[J]. Genomics, 2012, 99(3): 169-177.
Download   [Fasta]      
Transcriptome 3
Tissue Pupa
Year 2012
Platform Illumina
Layout PAIRED
Raw reads 27,514,263
Data accession SRR179509
Assemble software Trnity
Contigs 82,625
Annotated 36,059
Reference He W, You M, Vasseur L, et al. Developmental and insecticide-resistant insights from the< i> de novo assembled transcriptome of the diamondback moth,< i> Plutella xylostella[J]. Genomics, 2012, 99(3): 169-177.
Download   [Fasta]      
Transcriptome 4
Tissue Adult
Year 2012
Platform Illumina
Layout PAIRED
Raw reads 28,100,307
Data accession SRR179510
Assemble software Trnity
Contigs 78,362
Annotated 36,608
Reference He W, You M, Vasseur L, et al. Developmental and insecticide-resistant insights from the< i> de novo assembled transcriptome of the diamondback moth,< i> Plutella xylostella[J]. Genomics, 2012, 99(3): 169-177.
Download   [Fasta]      
Transcriptome 5
Tissue chlorpyrifos-resistant larva
Year 2012
Platform Illumina
Layout PAIRED
Raw reads 28,318,950
Data accession SRR179511
Assemble software Trnity
Contigs 69,120
Annotated 33,903
Reference He W, You M, Vasseur L, et al. Developmental and insecticide-resistant insights from the< i> de novo assembled transcriptome of the diamondback moth,< i> Plutella xylostella[J]. Genomics, 2012, 99(3): 169-177.
Download   [Fasta]      
Transcriptome 6
Tissue fipronil-resistant larva
Year 2012
Platform Illumina
Layout PAIRED
Raw reads 29,793,272
Data accession SRR179587
Assemble software Trnity
Contigs 74,699
Annotated 34,889
Reference He W, You M, Vasseur L, et al. Developmental and insecticide-resistant insights from the< i> de novo assembled transcriptome of the diamondback moth,< i> Plutella xylostella[J]. Genomics, 2012, 99(3): 169-177.
Download   [Fasta]