Warning! We strongly recommend Internet Explorer (9.0 and later) and Google Chrome for better display.

Data -> Ceratitis capitata
[help]


Resource [Genomic]   [GFF3]   [mRNA]   [Protein]
Data source NCBI
Publication
Organism strain
Assembly
Genomic Size 469 Mb
GC content 41.26%
Number of scaffolds 1,824
Scaffold N50 4,060,615
Number of contigs 25,561
Contig N50 45,711
Gene Set
Gene 23,710
Protein 23,087
BioSample SAMN02953830
Submitter The i5k Initiative
Assembly level Scaffold
GenBank assembly accession GCA_000347755.1
RefSeq assembly accession GCF_000347755.1
WGS Project AOHK01
Assembly method AllPaths v. 35218; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2
Sequencing technology Illumina HiSeq
Transcriptome 1
Tissue the pupal stage and adult male stage : whole body
Year
Platform
Layout
Raw reads
Data accession SRR915830 SRR915831 SRR915832 SRR915833 SRR915835 SRR915836 SRR915834 SRR915837 SRR915838 SRR915839 SRR915840 SRR915844 SRR915845 SRR915846 SRR915848 SRR915850 SRR915851 SRR915852
Assemble software Trinity r2012-10-05
Contigs 21,761
Annotated
Reference
Download   [Fasta]