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Data -> Chilo suppressalis
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Resource [Genomic]   [GFF3]   [mRNA]   [Protein]
Data source ChiloDB
Publication Yin, C. et al. ChiloDB: a genomic and transcriptome database for an important rice insect pest Chilo suppressalis. Database : the journal of biological databases and curation 2014, doi:10.1093/database/bau065 (2014).  [PDF]
Organism strain "Taihu"
Assembly ChiloDB v1.0
Genomic Size 824 Mb
GC content 35.7%
Number of scaffolds 80,479
Scaffold N50 5,216
Number of contigs 247,063
Contig N50 2,019
Gene Set ChiloDB v1.0
Gene 10,221
Protein 10,221
BioSample SAMN01797446
Submitter Department of entomology, College of Plant Protection, Nanjing Agricultural University
Assembly level Contig
GenBank assembly accession GCA_000636095.1
RefSeq assembly accession n/a
WGS Project ANCD01
Assembly method SOAPdenovo v. 1.05
Sequencing technology Illumina GAII
Transcriptome 1
Tissue midgut
Year 2012
Platform Illumina
Layout PAIRED
Raw reads 19,700,001
Data accession SRP011415
Assemble software Trnity
Contigs 37,040
Annotated 15,446
Reference
Download   [Fasta]      
Transcriptome 2
Tissue mixed sample
Year 2011
Platform Illumina
Layout PAIRED
Raw reads 20,899,325
Data accession SRA060774
Assemble software Trnity
Contigs 69,977
Annotated 27,347
Reference
Download   [Fasta]      
Transcriptome 3
Tissue larvae
Year
Platform
Layout
Raw reads
Data accession SRR651040
Assemble software SOAPdenovo v. 1.03
Contigs 70,738
Annotated
Reference
Download   [Fasta]